View source for ArgoNeuT

'''ArgoNeuT Data'''
* ArgoNeuT Event Classifcation Manual [http://www.lhep.unibe.ch/mediawiki/images/9/9e/HandScanProcedure_draft.pdf HandScanProcedure_draft.pdf]
* Shower Reconstruction in Icarus [http://www.lhep.unibe.ch/mediawiki/images/8/83/ICARUS_pi0shower.pdf ICARUS_pi0shower.pdf]
* Neutrino mode: Run 607 to 652, i.e. from 14.09.2009 to 30.09.2009
* Anti-neutrino mode: Run 653 to 851, i.e. from 30.09.2009 to 22.02.2010

'''The lhepat03.unibe.ch'''
* This machine is a grid file server on CentOS 5 with LArSoft installed.
* [[Installation of local LarSoft copy on Centos5]]
* Updating the installation occasionally (as root user)
  * source /opt/larsoft/setup_lhepat03.sh
  * lar_update_rel -rel development
  * make
* Using the event display
  * source /grid/ArgonNeut/setup_lhepat03.sh
  * evd -x argoneut.xml -x evd.xml -i /grid/ArgonNeut/data/fbtR628.root
* Create a private working release
  * Make a new user and password as root: adduser crohr; passwd crohr (choose local account)
  * Copy /home/argonsw/.bash_profile into /home/crohr
  * Login as new user and create a working directory: [lhepdaq6] /data/larsoft/releases > newrel -t development crohr
  * Copy and adapt the setup script: cp /data/larsoft/releases/shaug/larsoft.sh ./
* Work on geometry 
  * Edit files in, for example /data/larsoft/releases/crohr/Geometry/gdml/argoneut
  * Create the real geometry file: ./make_gdml.pl -i argoneut-gdml-fragments.xml -o argoneut.gdml
  * Inspect the geometry with ROOT: root -l argoneut_geo.C. [root] gGeoManager->FindVolumeFast("volWorld")->Draw()
* Using the MC simulation
  * source /grid/ArgonNeut/setup_lhepat03.sh
  * in the own release:
    * addpkg -h EventGenerator
    * make EventGenerator.all
    * mkdir MC_variables
    * scp /grid/ArgonNeut/Coding/MC_variables/* to your MC_variables folder
    * edit xml_development/detsimModule.xml and replace path for argoshapkern.txt and/or shape-argo.root with path to your MC_variables directory
    * edit EventGenerator/singleparticle.xml to change for the correct particle to generate
  * ana -x argoneut.xml -x prodsinglesim.xml -n10 -i /dev/null:1/1/1 -o test.root
    * -n10 : 10 events, 1/1/1/ : run number, test.root : output file
* Using the Shower Analysis by Biagio
  * source /grid/ArgonNeut/setup_lhepat03.sh
    * addpkg -h ShowerFinder
      * edit ShowerFinder/ShowerReco.cxx and activate the WriteHistos() routine
    * make ShowerFinder.all   
    * ana -x argoneut.xml -x shower.xml test.root
    * The outputfile Shower_0001.root contains a collection of histograms obtained from the showers
* Analysis example etc here : https://cdcvs.fnal.gov/redmine/wiki/larsoft
* Remote access with ngls gsiftp://lhepat03.unibe.ch/ArgonNeut/
* Using the Uni Geneva Image Retrival Client (Gift)
  * Use some webspace, i.e. user@lheppc15.unibe.ch (here user =strauss)
  * go to public_html
  * mkdir LTPC_IMAGE
  * wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/demo.tgz
  * tar -xzf demo.tgz - creates demo/ folder structure in LTPC_IMAGE
  * [http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/demo/index.php Demo Webpage]
* Using the Uni Geneva Image Retrival Server (Gift)
  * go to public_html/LTPC_IMAGE
  * mkdir server, cd into
  * wget http://arcgift.unige.ch/~xmzh/templates.tgz alternatively [http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/server/templates.tgz this one]
  * tar -xzf templates.tgz creates template structure for server-client communication (e.g. serverAnsRandom handles query for random image, not all files are needed)
  * wget http://arcgift.unige.ch/~xmzh/SimpleWebServer.jar alternatively [http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/server/SimpleWebServer.jar this one]
  * mkdir config/
  * nano [http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/server/config/config config]
    * Server communication files
    * The csv file which holds information of all images that should be compared
    * The directory of the images
    * The thumbnail directory of the images (128x128)
  * start a screen session
    * java -jar SimpleWebServer.jar "config file path" port number 12750 
    * In client webpage, the server adress can be entered with the corresponding port (e.g. "localhost" 12750)
* Using the Uni Geneva Image Retrival DataBase (Gift)
  * Get the java executables to generate the files
    * wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/input_generator/LTPCImageFeatureExtraction.jar
    * wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/input_generator/SeqFastKMeans.jar
    * wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/input_generator/seqClusterMapGeneration.jar
    * wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/input_generator/seqHistogramGeneration.jar
  * mkdir input_folder with images and thumbnails (visible from the web, so the cleint can access the data)
  * mkdir output_folder
  * java -jar LTPCImageFeatureExtraction.jar "input_images/" "output_script1/"
  * java -jar SeqFastKMeans.jar "output_script1/"
  * java -jar seqClusterMapGeneration.jar "output_script1/"
  * java -jar seqHistogramGeneration.jar "output_script1/"
  * in output_folder the file histogram.csv is created, which can be used as the csv file of the server config

'''Visual Event Scanning'''
* Follow the manual [[http://www.lhep.unibe.ch/mediawiki/index.php/File:HandScanProcedure_draft.pdf]]