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Lhep at 11:52, 19 January 2011

2011-01-19T11:52:51Z

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'''ArgoNeuT Data'''
* ArgoNeuT Event Classifcation Manual [http://www.lhep.unibe.ch/mediawiki/images/9/9e/HandScanProcedure_draft.pdf HandScanProcedure_draft.pdf]
* Shower Reconstruction in Icarus [http://www.lhep.unibe.ch/mediawiki/images/8/83/ICARUS_pi0shower.pdf ICARUS_pi0shower.pdf]
* Neutrino mode: Run 607 to 652, i.e. from 14.09.2009 to 30.09.2009
* Anti-neutrino mode: Run 653 to 851, i.e. from 30.09.2009 to 22.02.2010

'''The lhepat03.unibe.ch'''
* This machine is a grid file server on CentOS 5 with LArSoft installed.
* [[Installation of local LarSoft copy on Centos5]]
* Updating the installation occasionally (as root user)
* source /opt/larsoft/setup_lhepat03.sh
* lar_update_rel -rel development
* make
* Using the event display
* source /grid/ArgonNeut/setup_lhepat03.sh
* evd -x argoneut.xml -x evd.xml -i /grid/ArgonNeut/data/fbtR628.root
* Create a private working release
* Make a new user and password as root: adduser crohr; passwd crohr (choose local account)
* Copy /home/argonsw/.bash_profile into /home/crohr
* Login as new user and create a working directory: [lhepdaq6] /data/larsoft/releases > newrel -t development crohr
* Copy and adapt the setup script: cp /data/larsoft/releases/shaug/larsoft.sh ./
* Work on geometry
* Edit files in, for example /data/larsoft/releases/crohr/Geometry/gdml/argoneut
* Create the real geometry file: ./make_gdml.pl -i argoneut-gdml-fragments.xml -o argoneut.gdml
* Inspect the geometry with ROOT: root -l argoneut_geo.C. [root] gGeoManager->FindVolumeFast("volWorld")->Draw()
* Using the MC simulation
* source /grid/ArgonNeut/setup_lhepat03.sh
* in the own release:
* addpkg -h EventGenerator
* make EventGenerator.all
* mkdir MC_variables
* scp /grid/ArgonNeut/Coding/MC_variables/* to your MC_variables folder
* edit xml_development/detsimModule.xml and replace path for argoshapkern.txt and/or shape-argo.root with path to your MC_variables directory
* edit EventGenerator/singleparticle.xml to change for the correct particle to generate
* ana -x argoneut.xml -x prodsinglesim.xml -n10 -i /dev/null:1/1/1 -o test.root
* -n10 : 10 events, 1/1/1/ : run number, test.root : output file
* Using the Shower Analysis by Biagio
* source /grid/ArgonNeut/setup_lhepat03.sh
* addpkg -h ShowerFinder
* edit ShowerFinder/ShowerReco.cxx and activate the WriteHistos() routine
* make ShowerFinder.all
* ana -x argoneut.xml -x shower.xml test.root
* The outputfile Shower_0001.root contains a collection of histograms obtained from the showers
* Analysis example etc here : https://cdcvs.fnal.gov/redmine/wiki/larsoft
* Remote access with ngls gsiftp://lhepat03.unibe.ch/ArgonNeut/
* Using the Uni Geneva Image Retrival Client (Gift)
* Use some webspace, i.e. user@lheppc15.unibe.ch (here user =strauss)
* go to public_html
* mkdir LTPC_IMAGE
* wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/demo.tgz
* tar -xzf demo.tgz - creates demo/ folder structure in LTPC_IMAGE
* [http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/demo/index.php Demo Webpage]
* Using the Uni Geneva Image Retrival Server (Gift)
* go to public_html/LTPC_IMAGE
* mkdir server, cd into
* wget http://arcgift.unige.ch/~xmzh/templates.tgz alternatively [http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/server/templates.tgz this one]
* tar -xzf templates.tgz creates template structure for server-client communication (e.g. serverAnsRandom handles query for random image, not all files are needed)
* wget http://arcgift.unige.ch/~xmzh/SimpleWebServer.jar alternatively [http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/server/SimpleWebServer.jar this one]
* mkdir config/
* nano [http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/server/config/config config]
* Server communication files
* The csv file which holds information of all images that should be compared
* The directory of the images
* The thumbnail directory of the images (128x128)
* start a screen session
* java -jar SimpleWebServer.jar "config file path" port number 12750
* In client webpage, the server adress can be entered with the corresponding port (e.g. "localhost" 12750)
* Using the Uni Geneva Image Retrival DataBase (Gift)
* Get the java executables to generate the files
* wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/input_generator/LTPCImageFeatureExtraction.jar
* wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/input_generator/SeqFastKMeans.jar
* wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/input_generator/seqClusterMapGeneration.jar
* wget http://www.lhep.unibe.ch/strauss/LTPC_IMAGE/input_generator/seqHistogramGeneration.jar
* mkdir input_folder with images and thumbnails (visible from the web, so the cleint can access the data)
* mkdir output_folder
* java -jar LTPCImageFeatureExtraction.jar "input_images/" "output_script1/"
* java -jar SeqFastKMeans.jar "output_script1/"
* java -jar seqClusterMapGeneration.jar "output_script1/"
* java -jar seqHistogramGeneration.jar "output_script1/"
* in output_folder the file histogram.csv is created, which can be used as the csv file of the server config

'''Visual Event Scanning'''
* Follow the manual [[http://www.lhep.unibe.ch/mediawiki/index.php/File:HandScanProcedure_draft.pdf]]

ArgoNeuT - Revision history

Lhep: 1 revision imported

Lhep at 11:52, 19 January 2011